Browsing by Department "Marine Research (MA-RE) Institute"
Now showing 1 - 20 of 37
Results Per Page
Sort Options
- ItemOpen AccessA case study from the southern Cape linefishery 1: The difficulty of fishing in a changing world(2017) Gammage, Louise C; Mather, CharlesVariability on multiple temporal and spatial scales exposes fishers and fishing communities to multiple stressors. The impact and interplay of these stressors need to be considered to improve our understanding of social-ecological linkages if sustainable livelihoods are to be promoted. To this end, participant-led research was conducted in the small-scale traditional commercial linefishery of the southern Cape (South Africa) between Witsand and Mossel Bay. Knowledge and perceptions regarding stressors responsible for changes in the social-ecological system, which ultimately affect the fishers’ ability to fish successfully, were recorded using semi-formal interviews and focus groups with 50 participants. The results presented not only offer valuable insights into the day-to-day experiences of these fishers, but also expose knowledge gaps that exist in micro-scale interactions influencing the fishery system. An analysis of various stressors is presented, which includes the impacts of and responses to climate variability; challenges presented by fisheries policies and regulatory frameworks; social and economic considerations; inadequate infrastructure; and general political considerations. The development of a more comprehensive understanding of stressors that affect the social-ecological system at various scales provides valuable insights into a fishery system that is currently not well described, and provides the basis for analyses into vulnerability and resilience.
- ItemOpen AccessAccommodating dynamic oceanographic processes and pelagic biodiversity in marine conservation planning(Public Library of Science, 2011) Grantham, Hedley S; Game, Edward T; Lombard, Amanda T; Hobday, Alistair J; Richardson, Anthony J; Beckley, Lynnath E; Pressey, Robert L; Huggett, Jenny A; Coetzee, Janet C; Van der Lingen, Carl DPelagic ecosystems support a significant and vital component of the ocean's productivity and biodiversity. They are also heavily exploited and, as a result, are the focus of numerous spatial planning initiatives. Over the past decade, there has been increasing enthusiasm for protected areas as a tool for pelagic conservation, however, few have been implemented. Here we demonstrate an approach to plan protected areas that address the physical and biological dynamics typical of the pelagic realm. Specifically, we provide an example of an approach to planning protected areas that integrates pelagic and benthic conservation in the southern Benguela and Agulhas Bank ecosystems off South Africa. Our aim was to represent species of importance to fisheries and species of conservation concern within protected areas. In addition to representation, we ensured that protected areas were designed to consider pelagic dynamics, characterized from time-series data on key oceanographic processes, together with data on the abundance of small pelagic fishes. We found that, to have the highest likelihood of reaching conservation targets, protected area selection should be based on time-specific data rather than data averaged across time. More generally, we argue that innovative methods are needed to conserve ephemeral and dynamic pelagic biodiversity.
- ItemOpen AccessAssessment of a pond for oyster hatchery development in South Africa(2015) Simmons, Aron; Jackson, Sue; Bolton, John JThis study assessed a man-made salt-water pond (saltwater pond 1 SP1) as a potential site for the development of an oyster hatchery in Velddrif, South Africa. Over the study period it was observed that the site was not suitable for oyster larvae culture due to the following factors: temperature spikes during the summer months, low dissolved oxygen levels, high salinity levels, and the proliferation of the filamentous green algae (FGA), mainly the sp. Rhizoclonium implexum. Widespread patches of R. implexum were observed within SP1 and increased in biomass over the study period. Biomass patterns were not measured within this study, however microcosm experiments directed at nutrient depletion rates caused by FGA proliferation assessed the effect of the FGA on the system. Within microcosm experiments with and without FGA, nitrite within the system was significantly lower in the FGA inclusion treatment. Pond nutrient dynamics within the system indicated that widespread nutrient depletion occurred between the incoming water and the rest of the pond, and it was clear that the inflow station had significantly higher nutrient concentrations than all the other stations within SP1. Phytoplankton concentrations were extremely low and could be attributed to the FGA dominated state within SP1. Taken together with the fact the water levels within SP1 were not stable, the data suggested that SP1 was not an optimal source of seawater for either algal or larval oyster culture, and an alternative oyster hatchery site should be assessed.
- ItemOpen AccessBacterioplankton dynamics in the Southern Benguela upwelling region(1989) Painting, Suzanne Jane; Lucas, Michael IThe role of heterotrophic bacteria in the carbon and nitrogen flux of the pelagic food web was investigated during laboratory and field-based studies of the temporal development of the planktonic community after upwelling. Bacterial community structure, activity and production were closely coupled to the upwelling cycle and to the dynamics of the phytoplankton community. The initial bacterial population (<l x 10⁶ cells ml⁻¹, 20 to 40 μg C l⁻¹) was metabolically dormant. Increased availability of phytosynthetically produced dissolved organic carbon (PDOC) stimulated bacterial growth (0.016 h⁻¹) and abundance (8 to 10 x 10⁶ cells ml⁻¹, 140 to 200 μg C l⁻¹). Rapid successions in the dominant plateable strains were attributed to substrate preferences and substrate availability. Significant correlations of bacterial biomass with total standing stocks of phytoplankton and particulate carbon provided evidence of close coupling between bacteria and PDOC, and between bacteria and recalcitrant substrates available during phytoplankton decay. These relationships were best described by power functions, suggesting that bacterial biomass was relatively reduced at high levels by predation. A microcosm study indicated that zooflagellate predation could control bacterial biomass. Low net growth yields (34 to 36%) of flagellates suggested inefficient transfer of carbon to higher trophic levels, but considerable nitrogen regeneration (ca 6 to 7 μg N mg dry weight⁻¹ h⁻¹). Thymidine-measured bacterial production (TTI, <0.1 to 1.25 mg C m⁻³ h⁻¹) was linearly related to phytoplankton growth. Non-uniform response of bacteria to added tracer substrates may result in underestimates of bacterial production by 2 to 34 times by TTI, particularly in deep or oligotrophic waters, or during phytoplankton decay. Close coupling of copepod (Calanoides carinatus) production to the upwelling cycle suggested co-existence of the microbial food web and the classical diatom-copepod food chain. Recently upwelled water was dominated by phytoplankton. Assuming that all phytoplankton carbon was available for utilisation, copepods and bacteria were calculated to consume approximately 12 and 22% of primary production respectively. As the bloom declined the planktonic community was increasingly dominated by bacteria, detritus and mesozooplankton. On average, copepods consumed 60% of primary production, while bacteria consumed 49%. Carbon consumption requirements of both bacteria and copepods were satisfied by resource partitioning and carbon cycling. Under food-limiting conditions herbivorous copepods may switch to omnivory, ingesting microzooplankton of the microbial food web, and stimulating enhanced remineralisation to further sustain primary production. A generic size-based simulation model of the dynamics of the plankton community indicated that bacteria and the microbial food web increase the overall productivity of the planktonic food web, and that heterotroph predation in the smaller size classes (<200 μm) is an important mechanism in nutrient recycling.
- ItemOpen AccessThe biology and macroparasites of the sixgill sawshark Pliotrema warreni(2017) Foor, Brandon; Attwood, Colin; Reed, Cecile CThirty-two specimens of the sixgill sawshark, Pliotrema warreni, were trawled near Bird Island in Algoa Bay on the Eastern coast of South Africa in April and May 2015. The specimens were examined for anatomical proportions, reproductive characteristics, diet, and parasite assemblages. Several external measurements were collected including mass, total length, standard length, girth, rostrum length, interoccular to pre-caudal length, first dorsal origin to second dorsal origin, first dorsal origin to pre-caudal origin, and mouth width. The equation for mass (g) vs. total length (mm) was ln(Mass)=0.2997*ln(TL)+2.0383 for females and ln(Mass)=0.3321*ln(TL)+1.941 for males. 1st Dorsal to 2nd dorsal origin length (DD) to total length equations for females and males were DD=0.2451*TL-26.677 and DD=0.2598*TL-34.535, respectively. Mean lengths and masses were 11.5% greater and 50.3% heavier in females than males, respectively. Females were on average, 994 mm (759 mm – 1283 mm) in length while males were 891.8 mm (763 mm – 1015 mm). Average mass for females was 1702.5 g (602.5 g – 3478.5 g) whereas males it was 1132.6 g (687 g – 1593.5 g). Based on these data both sexes display isometric growth. Males were determined to reach sexually maturity around 850 mm which is similar to that reported by Ebert et al., (2013) around 830 mm. Females were found to reach sexual maturity at 1000 mm which is 100 mm smaller than what is reported by Ebert et al., (2013). Stomach mass increased with total mass and total length regardless of sex (female R² = 0.507; male R² = 0.213 for length and female R² = 0.6123; male R² = 0996 for mass). Females consumed larger prey items in terms of mass and length as well as a higher quantity of prey than males presumably because they are the larger sex and have an increased need for nourishment to provide for pregnancy. Prey items were redeye round herring, Etrumeus whiteheadi (64.96% of the diet), a benthic shrimp species not identified (7.69%), and Cape horse mackerel, Trachurus trachurus capensis (0.85%). Despite strict adherence to the guidelines for age determination for elasmobranchs provided in the literature, the conventional method used which involved extensive cleaning of the vertebral centra with an array of chemicals, setting and cutting in an epoxy resin, and staining for microscopy, did not yield readable results which could be used to determine the ages of these sharks. The highest abundance of parasites were found in the stomachs. Three specimens of a cymothoid isopod was found externally. Two specimens of Ascaris sp. nematode were found in the visceral cavity. The remaining 18 parasites consisted of three Neoechinorhynchidae sp. of acanthocephalan and 15 Proleptus obtusus nematodes all of which were found inside the stomachs. Given the results of the parasite survey, males and females do not have the same parasites as females have four different species while males only have one. More collections from other areas and times of year are necessary to obtain a better description of the species.
- ItemOpen AccessA coastal seawater temperature dataset for biogeographical studies: large biases between in situ and remotely-sensed data sets around the Coast of South Africa(Public Library of Science, 2013) Smit, Albertus J; Roberts, Michael; Anderson, Robert J; Dufois, Francois; Dudley, Sheldon F J; Bornman, Thomas G; Olbers, Jennifer; Bolton, John JGridded SST products developed particularly for offshore regions are increasingly being applied close to the coast for biogeographical applications. The purpose of this paper is to demonstrate the dangers of doing so through a comparison of reprocessed MODIS Terra and Pathfinder v5.2 SSTs, both at 4 km resolution, with instrumental in situ temperatures taken within 400 m from the coast. We report large biases of up to +6°C in places between satellite-derived and in situ climatological temperatures for 87 sites spanning the entire ca . 2 700 km of the South African coastline. Although biases are predominantly warm (i.e. the satellite SSTs being higher), smaller or even cold biases also appear in places, especially along the southern and western coasts of the country. We also demonstrate the presence of gradients in temperature biases along shore-normal transects -- generally SSTs extracted close to the shore demonstrate a smaller bias with respect to the in situ temperatures. Contributing towards the magnitude of the biases are factors such as SST data source, proximity to the shore, the presence/absence of upwelling cells or coastal embayments. Despite the generally large biases, from a biogeographical perspective, species distribution retains a correlative relationship with underlying spatial patterns in SST, but in order to arrive at a causal understanding of the determinants of biogeographical patterns we suggest that in shallow, inshore marine habitats, temperature is best measured directly.
- ItemOpen AccessCombined fishing and climate forcing in the southern Benguela upwelling ecosystem: an end-to-end modelling approach reveals dampened effects(Public Library of Science, 2014) Travers-Trolet, Morgane; Shin, Yunne-Jai; Shannon, Lynne J; Moloney, Coleen L; Field, John GThe effects of climate and fishing on marine ecosystems have usually been studied separately, but their interactions make ecosystem dynamics difficult to understand and predict. Of particular interest to management, the potential synergism or antagonism between fishing pressure and climate forcing is analysed in this paper, using an end-to-end ecosystem model of the southern Benguela ecosystem, built from coupling hydrodynamic, biogeochemical and multispecies fish models (ROMS-N 2 P 2 Z 2 D 2 -OSMOSE). Scenarios of different intensities of upwelling-favourable wind stress combined with scenarios of fishing top-predator fish were tested. Analyses of isolated drivers show that the bottom-up effect of the climate forcing propagates up the food chain whereas the top-down effect of fishing cascades down to zooplankton in unfavourable environmental conditions but dampens before it reaches phytoplankton. When considering both climate and fishing drivers together, it appears that top-down control dominates the link between top-predator fish and forage fish, whereas interactions between the lower trophic levels are dominated by bottom-up control. The forage fish functional group appears to be a central component of this ecosystem, being the meeting point of two opposite trophic controls. The set of combined scenarios shows that fishing pressure and upwelling-favourable wind stress have mostly dampened effects on fish populations, compared to predictions from the separate effects of the stressors. Dampened effects result in biomass accumulation at the top predator fish level but a depletion of biomass at the forage fish level. This should draw our attention to the evolution of this functional group, which appears as both structurally important in the trophic functioning of the ecosystem, and very sensitive to climate and fishing pressures. In particular, diagnoses considering fishing pressure only might be more optimistic than those that consider combined effects of fishing and environmental variability.
- ItemOpen AccessThe commercial beach-seine fishery in False Bay, South Africa(1994) Lamberth, Stephen Justin; Bennett, B AThis study was initiated in response to allegations by the conservation lobby that the commercial beach-seine fishery in False Bay was jeopardizing fish stocks and detrimentally affecting the ecology of the Bay. Its main aims were to quantify the current catch and place it in an historical perspective, to describe seasonal patterns in catches and effort and to assess the impacts of netting on juvenile fish and benthic organisms. The overall objective was to provide a "scientific" basis for the resolution of the controversy surrounding this fishery.
- ItemOpen AccessConsidering one's option when the fish leave: a case study of the traditional commercial handline fishery of the Southern Cape(2015) Gammage, Louise Carin; Jarre, Astrid; Mather, CharlesToday, many pressures (socio-economic, resource scarcity, policy, and regulation) make fishers and their communities vulnerable on a variety of fronts. These pressures threaten fishing communities along the South African coast. Both natural and social changes in the traditional handline fishery affect the social-ecological system of a region as a whole. Fishers need to cope with these local global changes and require systems that support their strategies to achieve resilience. Furthermore, stressors that drive variability in the fishery system occur on multiple temporal and spatial scales thereby exposing fishers and communities to multiple stressors. The impact and interplay of these stressors at multiple scales need to be taken into account to develop a clear understanding of social-ecological linkages if sustainable livelihoods are to be promoted and guaranteed. There is however a shortage of appropriately scaled, context-specific data that is needed to inform various decision-making processes. To this end, participant-led research was conducted in six communities in the Southern Cape, where 50 participants were interviewed over a period of 6 months in 2013/2014. The interviews were an attempt to gather and record perceptions and knowledge regarding stressors that are responsible for the social- ecological system and ultimately affect the fishers' ability to fish successfully. Based on this knowledge, the research was aimed at gaining insight into what strategies are currently employed to ensure sustainable livelihoods. The data presented does not only offer valuable insights into the day-to-day experiences of the group of fishers, but also expose various knowledge gaps that exist in micro-scale interactions that influence the fishery system. This is achieved by first providing an analysis of various stressors, which include the impacts and responses to climate variability, challenges presented by policy and regulatory frameworks, social and economic considerations, challenges presented by infrastructure and political considerations. The adaptation, coping, and reaction strategies implemented are analysed using a place-based context and variability of strategies employed between each specific place is discussed. Apart from highlighting knowledge gaps, the development of a more complete understanding of current reacting, coping and adaptive strategies as well as the drivers behind the decisions contained in this thesis, provides valuable insight into a fishery system that is not well-described which underscores the need for context-specific research at smaller scales.
- ItemOpen AccessDeep water parapagurid hermit crabs: their distribution, abundance, population structure and associations in the Southern Benguela(2017) Wright, Amy Grace; Griffiths, Charles LThe parapagurids Sympagurus dimorphus (Studer, 1883) and Parapagurus bouvieri (Stebbing, 1910) dominate South African deeper-water benthic invertebrate communities. Samples from the 2016 DAFF bi-annual hake demersal research trawl surveys provided data on population structure and morphology. Since these species forego the use of "traditional" gastropod shells in favour of symbiotically-associated Epizoanthus pseudoshells, these data were also used to investigate parameters of pseudoshell association. S. dimorphus to have a female-biased sex ratio of 1:1.5, and P. bouvieri of 1:1. The proportion of males in both species increased with cephalothoracic shield (CL) length. S. dimorphus males had positive allometric major right chelipeds, while P. bouvieri cheliped lengths were positively allometric in males, and negatively allometric in females. All collected P. bouvieri occurred in pseudoshells, but S. dimorphus showed a real shell occupancy rate of 3.39% (n = 38). A positive relationship was found between CL size and real shell occupation frequency (r2 = 0.96). S. dimorphus pseudoshell zoanthid polyps increased in number as a function of both total shell volume (R2 = 0.73) and colony height (R2 = 0.61), with polyps present on every available part of the shell. No such relationship was found for P. bouvieri, presumably because the polyps are distributed in a linear pattern around the back and outside of the pseudoshell. Juvenile parapagurids appear to select for Naticidae original shells, with Euspira napus being the dominant original shell species for both S. dimorphus (45.45 %) and P. bouvieri (39.00 %). Questions are raised about whether these hermits exist along an evolutionary continuum of traditional shell reliance, whereby the species utilise their pseudoshells differently - P. bouvieri appears to show a stronger mutualistic symbiosis with its exclusive pseudoshell species than S. dimorphus, and may have lost the ability to change shelters entirely, utilising the pseudoshell as a brood pouch covering only the abdomen, rather than as a shell in which to retract to escape predation. Data from 1987 - 2014 surveys were used to map the distribution patterns and densities of these species in the southern Benguela, and to investigate changes in the populations over time. As it stands, no correction factor need be applied to South African parapagurid catches as a result of the 2003-2004 change in survey gear. However, further work is needed. S. dimorphus occurred at a significantly greater mean sample mass (287.88 kg.km⁻²) than P. bouvieri (31.37 kg.km⁻²). The bulk of sample mass occurred within the West Coast Benguela upwelling region, with very few parapagurids caught over the Agulhas Bank, which may be too shallow for either species, given that S. dimorphus showed a preferential depth range of 200 - 299 m (range 30 - 814 m) and P. bouvieri of 400 - 499 m (range 62 - 700 m). The highest mean sample masses occurred on muddy sand (61.00 kg.km⁻²) and sandy sediments (45.68 kg.km⁻²). Overall catchability (mean = 43.35%) has remained constant over the 23 years (R2 = 0.13) with a slight trend towards increasing catchability over time, which may correspond to a change in survey design.
- ItemOpen AccessDiet of the Tristan rock lobster Jasus tristani following the 2011 soya spill at Nightingale Island(2017) Jones, Luke; Blamey, Laura K; Branch, George M; De Lecea, Ander MThe spiny lobster Jasus tristani inhabits the Tristan da Cunha Island archipelago in the South Atlantic Ocean 2,400km from the West coast of South Africa. It is commercially exploited across the archipelago and is the main economic source of income for the local government as it accounts for nearly 80% of the local gross domestic product. The commercial rock lobster industry was established in 1949, and the fishery is currently recognised as sustainable, and as a result was awarded a Marine Stewardship Council Certification in 2011. That same year however, the sinking of the OLIVA at Nightingale Island spilt 60,000 tonnes of soya beans (Glycine max), greatly affecting the local benthic environment, and with probable consequences for the local food web, including the diet of J. tristani. It is still unclear whether the soya beans are still on the seafloor at Nightingale Island as there have been no scientific surveys conducted since the spill. Using samples from 2015, I assessed whether the diet of the lobsters from Nightingale Island differs from that of lobsters from the unaffected Tristan and Inaccessible Islands, and whether there is any evidence of soya in the diet of the lobsters from Nightingale Island. In addition, I examined whether diet differed between lobsters of small or large size, and between shallow and deep depths. In total, 540 lobsters were sampled across the three islands, and a combination of gut content and stable isotope (SI) analysis was conducted to assess the dietary components of the lobsters. Gut fullness was significantly less at Nightingale Island suggesting there may be less food available on the reef. Statistical analyses showed that diet differed between all islands, depths and sizes, although this was difficult to ascertain from visual multidimensional scaling plots as diet showed considerable overlap and variability both within and between islands, depths and sizes. The stable isotope analysis showed significant differences in nitrogen levels among the three
- ItemOpen AccessEnvironmental drivers of coccolithophore abundance and calcification across Drake Passage (Southern Ocean)(2016) Poulton, Alex J; Bakker, Dorothee C E; Lucas, Mike I; Stinchcombe, Mark C; Tyrrell, TobyAlthough coccolithophores are not as common in the Southern Ocean as they are in sub-polar waters of the North Atlantic, a few species, such as Emiliania huxleyi, are found during the summer months. Little is actually known about the calcite production (CP) of these communities, or how their distribution and physiology relates to environmental variables in this region. In February 2009, we made observations across Drake Passage (between South America and the Antarctic Peninsula) of coccolithophore distribution, CP, primary production, chlorophyll-a and macronutrient concentrations, irradiance and carbonate chemistry. Although CP represented less than 1 % of total carbon fixation, coccolithophores were widespread across Drake Passage. The B/C morphotype of E. huxleyi was the dominant coccolithophore, with low estimates of coccolith calcite (~ 0.01 pmol C coccolith−1) from biometric measurements. Both cell-normalised calcification (0.01–0.16 pmol C cell−1 d−1) and total CP (< 20 μmol C m−3 d−1) were much lower than those observed in the sub-polar North Atlantic where E. huxleyi morphotype A is dominant. However, estimates of coccolith production rates were similar (0.1–1.2 coccoliths cell−1 h−1) to previous measurements made in the sub-polar North Atlantic. A multivariate statistical approach found that temperature and irradiance together were best able to explain the observed variation in species distribution and abundance (Spearman's rank correlation ρ = 0.4, p < 0.01). Rates of calcification per cell and coccolith production, as well as community CP and E. huxleyi abundance, were all positively correlated (p < 0.05) to the strong latitudinal gradient in temperature, irradiance and calcite saturation states across Drake Passage. Broadly, our results lend support to recent suggestions that coccolithophores, especially E. huxleyi, are advancing pole-wards. However, our in situ observations indicate that this may owe more to sea-surface warming and increasing irradiance rather than increasing CO2 concentrations.
- ItemOpen AccessThe environmental factors determining temporal distributions of cetaceans in Mossel Bay, South Africa(2017) Levy, David; Blamey, Laura K; Elwen, Simon; James, BridgetA variety of cetacean species make use of the bays along the South African coast for different purposes, including feeding, mating and calving. Sightings of five species of cetaceans were recorded from shore based locations between February 2010 and August 2014 in Mossel Bay, Western Cape. In this study, we aimed to examine the underlying environmental variables: sea surface temperature (°C), chlorophyll a concentration (mg.m-3) and moon brightness (as % of full) that potentially affect presence patterns within the bay, and several temporal scales (diurnal, monthly, seasonal, annual). The study focused on three whale species: the southern right whale (Eubalaena australis), humpback whale (Megaptera novaeangliae) and Bryde's whale (Balaenoptera brydei); and two dolphin species: the Indo- Pacific bottlenose dolphin (Tursiops aduncus), and the Indian Ocean humpback dolphin (Sousa plumbea). Generalized additive models (GAM) were used to model the sighting rate of the common cetacean species in the area, by relating sighting rate to the environmental variables. Cow-calf groups and adults-only groups were modelled separately for humpback and southern right whales. Chlorophyll a concentration is commonly indicative of high trophic productivity, and sea surface temperature is indicative of biophysical processes that influence cetacean distribution, as well as cetacean migration preferences. Change in sea surface temperature (over the study period) was a significant contributing factor to the sighting rate of cow-calf paired groups and adults-only groups of both right whales and humpback whales, underlying their greater sighting rate during the winter and spring months annually; thus, conforming to the seasonal migration from Antarctica for breeding and calving. Chlorophyll a concentration was a significant factor contributing to Bryde's whale, bottlenose and humpback dolphin distribution. These species reside along the South African coast all year round, but are more frequently seen when trophic productivity is high. During 2011, sea surface temperature values were lower and chlorophyll a concentrations greater than average in Mossel Bay, due to the La Niña effect. This was found to positively correlate with the use of Mossel Bay by the cetacean species in the area. This paper highlights the importance of biophysical processes on cetacean distribution at various temporal scales (diurnal, monthly, seasonal and annual), and the information it provides may be used for conservation planning management.
- ItemOpen AccessEnvironmental variables influencing spatial and temporal patterns of fish spawning and recruitment(2017) Mbatha, Fisokuhle Lungile; Moloney, Coleen L; Ostrowski, Marek; Lipinski, MarekABSTRACT Spawning times and spawning intensity during the life cycles of some fish species found off South Africa and Norway were synthesized using data collected from the literature. The comparison of temporal patterns in spawning of South African fish species showed variable spawning times and intensity depending on the environmental conditions within that spawning habitat. Their spawning migration durations were suggested to be short since they inhabit a dynamic coastal upwelling ecosystem with intra-seasonal differences caused by changes in upwelling strength enhanced by south-easterly winds, nutrient-limited waters on the spawning grounds and stable thermal conditions. This contrasts with Norwegian fish species, which showed patterns of spawning times and durations that are restricted and confined to spring (February – May), probably due to strong, consistent seasonality, depending on primary production. This explains the inter-annual differences observed in their spawning periods, where strong south-westerly winds (downwelling), light intensity and salinity stratification could influence long spawning migrations. For Cape hakes, environmental variability influencing recruitment was further investigated on the west coast nursery grounds of the southern Benguela, particularly for deep-water Cape hake (Merluccius paradoxus). Biophysical characteristics of the west coast nursery grounds were assessed in relation to distribution of deep-water Cape hake juveniles (< 15 cm) using physical data (CTD, alongshore wind speed anomalies) and biological data (abundance/density of hake juveniles, recruitment estimates). Distinct spatial patterns of hake distribution were evident in relation to near-bottom environmental factors (temperature, salinity and oxygen). Nansen surveys conducted from 2003 – 2013 during summer (January – February) showed greater abundance of hake juveniles over the Orange Banks than in other nursery areas. The hake juveniles occurred in mid-shelf waters with oxygen depletion (2 – 3 mL O₂.L⁻¹) and hypoxic conditions (< 2 mL O₂.L⁻¹) and temperature ranges of 7 – 11 ⁰C. Salinity appeared to have less influence on hake juveniles' distribution. During spring surveys, hake catches were reduced on all nursery grounds except near Cape Columbine. There was a strong positive correlation between deep-water Cape hake recruitment indices and summer wind speed anomalies for the same year (Lag = 0 year) and with autumn wind speed anomalies of the previous year (Lag = 1 year). The relationship between winds and near-bottom oxygen concentrations on the Orange Banks is unclear and needs to be investigated.
- ItemOpen AccessEstimates of Phytoplankton carbon from high resolution optical sensors in the Southern Ocean(2015) Ogunkoya, Ayodele Gilbert; Vichi, Marcello; Thomalla, SandyPhytoplankton is an important component of the oceanic carbon cycle, and deriving a good estimate of its carbon biomass (Cphyto) at ocean scale is difficult due to the lack of automatic sampling procedures. This is particularly difficult in the Southern Ocean, where winter conditions limit the sampling. This study explored the opportunity of using a high resolution data from the glider tracks in the Sub-Antarctic Zone of the Southern Ocean. The data consisted of particulate backscattering and chlorophyll and four different methods of estimating phytoplankton carbon were used, three of them based on backscattering (named 30%POC, B05 and M13) and one on chlorophyll (S09). The methods are different in their empirical formulations and source of original data. Three methods showed similar results despite the fact that one of them makes use of chlorophyll to derive Cphyto. Method M13 doubles that of the 3 other methods (~80mg C m-³ vs 40-50 mg C m-³). It was observed that discrepancy between M13 and the other 3 methods decreases with depth and when biomass was low (~0.25 mg Chl-a m-³) e.g., at depth 80 m. Investigating the drivers of variability in chl-a:C phyto ratios with depth and MLD shows little response and highlighted the need for more research in this region. Although M13 has a very low chl-a:Cphyto ratios, the range of variability was similar to that of the 30%POC and B05 methods and likely driven by variability in light and Fe limitation and changes in community structure. Despite a similar magnitude, the S09 method show a tight constrain in chl-a:Cphyto ratios that were methodologically driven and thus less sensitive to physiological adjustments in cellular chl-a:Cphyto ratios. The analysis also confirms that each oceanic region has factors that drive their variability and care needs to be taken when applying a method that was derived from one oceanic region to another.
- ItemOpen AccessgbpA as a Novel qPCR Target for the Species-Specific Detection of Vibrio cholerae O1, O139, Non-O1/Non-O139 in Environmental, Stool, and Historical Continuous Plankton Recorder Samples(Public Library of Science, 2015) Vezzulli, Luigi; Stauder, Monica; Grande, Chiara; Pezzati, Elisabetta; Verheye, Hans M.; Owens, Nicholas J. P.; Pruzzo, CarlaThe Vibrio cholerae N-acetyl glucosamine-binding protein A (GbpA) is a chitin-binding protein involved in V . cholerae attachment to environmental chitin surfaces and human intestinal cells. We previously investigated the distribution and genetic variations of gbpA in a large collection of V . cholerae strains and found that the gene is consistently present and highly conserved in this species. Primers and probe were designed from the gbpA sequence of V . cholerae and a new Taq-based qPCR protocol was developed for diagnostic detection and quantification of the bacterium in environmental and stool samples. In addition, the positions of primers targeting the gbpA gene region were selected to obtain a short amplified fragment of 206 bp and the protocol was optimized for the analysis of formalin-fixed samples, such as historical Continuous Plankton Recorder (CPR) samples. Overall, the method is sensitive (50 gene copies), highly specific for V . cholerae and failed to amplify strains of the closely-related species Vibrio mimicus . The sensitivity of the assay applied to environmental and stool samples spiked with V . cholerae ATCC 39315 was comparable to that of pure cultures and was of 10 2 genomic units/l for drinking and seawater samples, 10 1 genomic units/g for sediment and 10 2 genomic units/g for bivalve and stool samples. The method also performs well when tested on artificially formalin-fixed and degraded genomic samples and was able to amplify V . cholerae DNA in historical CPR samples, the earliest of which date back to August 1966. The detection of V . cholerae in CPR samples collected in cholera endemic areas such as the Benguela Current Large Marine Ecosystem (BCLME) is of particular significance and represents a proof of concept for the possible use of the CPR technology and the developed qPCR assay in cholera studies.
- ItemOpen AccessGlacial-interglacial variations of the water masses in the southeast Atlantic Ocean derived from foraminiferal neodymium isotope ratios(2017) Von Koslowski, Rebecca; Compton, John SVariations in the global climate over time have long been associated with changes in the meridional overturning circulation of the oceans. It is now commonly believed that, during the Last Glacial Maximum (LGM), the transport of North Atlantic Deep Water (NADW) to the southeast Atlantic Ocean was reduced. A popular method to trace these ambient changes is the stable isotope systematics of neodymium (given as εNd). In this study εNd data were measured on mixed planktic and bulk foraminifera from two gravity cores, GeoB8336-6 and GeoB8342-6, retrieved from the Cape Basin at water depths of 3524 and 3521 meters from the western continental slope of South Africa. The samples were prepared following the protocol presented by the Cambridge group (Tachikawa, Piotrowski, & Bayon, 2014). Planktic and bulk foraminifera samples taken from the same core depth interval had the same εNd ratios within error, which suggests that bulk foraminifera may provide a quick way to reconstruct ambient bottom water values. However, more research is needed to further support these findings. While the Holocene samples' εNd ratios (εNd(N36/6a) -10.7±0.3 and εNd(N42/6a mean) -10.2±0.4) lie within the range of modern Eastern NADW (εNd(modern ENADW) -10.9±1.2), glacial samples yield significantly more radiogenic εNd ratios (εNd(N42/6b) -7.7/ εNd(N36/6b) -8.1). This indicates the greater influence of southern-sourced water masses and thus provides further evidence for a reduction of NADW during the last glacial. MIS3 samples show ratios that lie in between those observed in the LGM and Holocene, and it is hypothesized that ocean circulation during MIS3 was comparable to that during the transition from the LGM to the Holocene (Termination I).
- ItemOpen AccessHabitat association and distribution of Nauticaris marionis at the Sub-Antarctic Prince Edward Islands(2016) Haley, Craig; Atkinson, Lara Jane; Von der Meden, Charles; Reed, Cecile CThe habitat associations between the caridean shrimp Nauticaris marionis and sessile epibenthic assemblages and substratum types of the Sub-Antarctic Prince Edward Islands were investigated. Twenty five stations, varying in substratum type, depth and location on the shelf and slope around the islands were sampled photographically with a towed benthic camera sled. At each station the substratum type was classified, sessile epibenthic cover was quantified through the use of digital quadrats and shrimp density was estimated. Results add to the broadly described distribution patterns of N. marionis by identifying specifically the habitat characteristics they generally utilize. The distribution of N. marionis was found to be influenced by a combination of substratum and sessile epibenthic assemblages, but not substratum type alone. Shrimp inhabited stations with >50 % biogenic cover on mud and gravel substrata, but were not found at stations with rocky-sand or rocky-mud substrata. Their distribution appears to also be influenced by depth, as shrimp were only found within a depth range of 50 - 160 m in this study. A strong correlation was found between N. marionis density and depth. Shrimp were found both inshore around the islands, and on the relatively shallow saddle between the islands. In comparison with previous studies, N. marionis was found at similar, if not higher, densities in this study, although they occupied a narrower depth range.
- ItemOpen AccessIdentification and distribution of South Africa's non-native beachfleas (Crustacea: Amphipoda: Talitridae)(2015) Diemer, Natalie; Griffiths, Charles LThe two introduced beachfleas Orchestia gammarellus and Platorchestia platensis reported from South Africa have complicated histories, filled with misidentification and inaccurate documentation of distribution records. At the outset of this study, records of Orchestia gammarellus were restricted to - Langebaan Lagoon, Knysna and Milnerton Lagoon; while Platorchestia platensis had been recorded from Knysna and '34°S/19°E' (Gansbaai area). To verify this information, historical records were re-examined and 16 estuaries and lagoons in the Western Cape and two in the Eastern Cape Province were searched in order to determine the correct historical and current distributions of both species. It was found that historically and still today O. gammarellus occurs in Langebaan Lagoon. Its other current known distribution is the Berg River Estuary, Milnerton Lagoon and the Bushman's River; it never occurred in Knysna and records from that site were misidentifications of P. platensis. Historic records could only confirm P. platensis in Knysna and one other unknown location (specimen apparently mislabelled). Current searches conversely found P. platensis to be wide-spread, its range extending from Langebaan Lagoon to Algoa Bay (regions east of Bushman's River were not searched). Both species were described morphologically in detail taking their growth patterns into account and highlighting their differences, allowing for easier identification.
- ItemOpen AccessThe influence of environmental variables on the presence of white sharks, Carcharodon carcharias at two popular Cape Town bathing beaches: A generalized additive mixed model(Public Library of Science, 2013) Weltz, Kay; Kock, Alison A; Winker, Henning; Attwood, Colin; Sikweyiya, MonwabisiShark attacks on humans are high profile events which can significantly influence policies related to the coastal zone. A shark warning system in South Africa, Shark Spotters , recorded 378 white shark ( Carcharodon carcharias ) sightings at two popular beaches, Fish Hoek and Muizenberg, during 3690 six-hour long spotting shifts, during the months September to May 2006 to 2011. The probabilities of shark sightings were related to environmental variables using Binomial Generalized Additive Mixed Models (GAMMs). Sea surface temperature was significant, with the probability of shark sightings increasing rapidly as SST exceeded 14°C and approached a maximum at 18°C, whereafter it remains high. An 8 times (Muizenberg) and 5 times (Fish Hoek) greater likelihood of sighting a shark was predicted at 18°C than at 14°C. Lunar phase was also significant with a prediction of 1.5 times (Muizenberg) and 4 times (Fish Hoek) greater likelihood of a shark sighting at new moon than at full moon. At Fish Hoek, the probability of sighting a shark was 1.6 times higher during the afternoon shift compared to the morning shift, but no diel effect was found at Muizenberg. A significant increase in the number of shark sightings was identified over the last three years, highlighting the need for ongoing research into shark attack mitigation. These patterns will be incorporated into shark awareness and bather safety campaigns in Cape Town.